{ "_id": "6a1ef11bb401979e734134e7", "Package": "simplePHENOTYPES", "Date": "2021-01-19", "Type": "Package", "Version": "1.3.0", "Title": "Simulation of Pleiotropic, Linked and Epistatic Phenotypes", "Description": "The number of studies involving correlated traits and the\navailability of tools to handle this type of data has increased\nconsiderably in the last decade. With such a demand, we need\ntools for testing hypotheses related to single and multi-trait\n(correlated) phenotypes based on many genetic settings. Thus,\nwe implemented various options for simulation of pleiotropy and\nLinkage Disequilibrium under additive, dominance and epistatic\nmodels. The simulation currently takes a marker data set as an\ninput and then uses it for simulating multiple traits as\ndescribed in Fernandes and Lipka (2020)\n.", "Authors@R": "c(\nperson(\"Samuel\", \"Fernandes\", email = \"samuelf@illinois.edu\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-8269-535X\")),\nperson(\"Alexander\", \"Lipka\", email = \"alipka@illinois.edu\" , role = \"aut\",\ncomment = c(ORCID = \"0000-0003-1571-8528\"))\n)", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "LazyData": "true", "biocViews": "", "RoxygenNote": "7.1.1", "VignetteBuilder": "knitr", "URL": "https://github.com/samuelbfernandes/simplePHENOTYPES", "BugReports": "https://github.com/samuelbfernandes/simplePHENOTYPES/issues", "NeedsCompilation": "no", "Repository": "https://samuelbfernandes.r-universe.dev", "Date/Publication": "2025-09-18 21:12:41 UTC", "RemoteUrl": "https://github.com/samuelbfernandes/simplephenotypes", "RemoteRef": "HEAD", "RemoteSha": "040cac186c122579d5d0128e075b39286a8db4a7", "Packaged": { "Date": "2026-05-19 08:10:58 UTC", "User": "root" }, "Author": "Samuel Fernandes [aut, cre] (ORCID:\n),\nAlexander Lipka [aut] (ORCID: )", "Maintainer": "Samuel Fernandes ", "MD5sum": "c452ff57b31619c9b037e78b3a917bee", "_user": "samuelbfernandes", "_type": "src", "_file": "simplePHENOTYPES_1.3.0.tar.gz", "_fileid": "143f4df51697d850adedc8e7fe608c2b508e26d098633618cab3bb3e43fa23dc", "_filesize": 1413113, "_sha256": "143f4df51697d850adedc8e7fe608c2b508e26d098633618cab3bb3e43fa23dc", "_created": "2026-05-19T08:10:58.000Z", "_published": "2026-06-02T15:04:59.753Z", "_distro": "noble", "_jobs": [ { "job": 79102817557, "time": 165, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7078212836" }, { "job": 79102818422, "time": 121, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7078198622" }, { "job": 79102817873, "time": 237, "config": "macos-oldrel-arm64", "r": "4.5.3", 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"040cac186c122579d5d0128e075b39286a8db4a7", "author": "Samuel Fernandes ", "committer": "GitHub ", "message": "Merge pull request #2 from Boris-alladassi/forked_boris_alladassi\n\nFix incorporation of all additive QTNs from a user-defined QTN_list", "time": 1758229961 }, "_maintainer": { "name": "Samuel Fernandes", "email": "samuelf@illinois.edu", "orcid": "0000-0001-8269-535X" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "data.table", "role": "Imports" }, { "package": "mvtnorm", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "SNPRelate", "role": "Imports" }, { "package": "gdsfmt", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "samuelbfernandes", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-38", "n": 1 } ], "_tags": [], "_topics": [ "pleiotropy", "simulation" ], "_stars": 16, "_contributors": [ { "user": "samuelbfernandes", "count": 7, "uuid": 15838005 }, { "user": "lipkalab", "count": 2, "uuid": 55813084 }, { "user": "boris-alladassi", "count": 1, "uuid": 54644727 } ], "_userbio": { "uuid": 15838005, "type": "user", "name": "Samuel Fernandes" }, "_downloads": { "count": 267, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/simplePHENOTYPES" }, "_mentions": 1, "_devurl": "https://github.com/samuelbfernandes/simplephenotypes", "_searchresults": 18, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/simplePHENOTYPES.html", "manual.pdf" ], "_homeurl": "https://github.com/samuelbfernandes/simplephenotypes", "_realowner": "samuelbfernandes", "_cranurl": true, "_releases": [ { "version": "1.0.5", "date": "2019-12-04" }, { "version": "1.2.4", 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