Package: simplePHENOTYPES
Date: 2021-01-19
Type: Package
Version: 1.3.0
Title: Simulation of Pleiotropic, Linked and Epistatic Phenotypes
Description: The number of studies involving correlated traits and the
        availability of tools to handle this type of data has increased
        considerably in the last decade. With such a demand, we need
        tools for testing hypotheses related to single and multi-trait
        (correlated) phenotypes based on many genetic settings. Thus,
        we implemented various options for simulation of pleiotropy and
        Linkage Disequilibrium under additive, dominance and epistatic
        models. The simulation currently takes a marker data set as an
        input and then uses it for simulating multiple traits as
        described in Fernandes and Lipka (2020)
        <doi:10.1186/s12859-020-03804-y>.
Authors@R: c(
    person("Samuel", "Fernandes", email = "samuelf@illinois.edu", role = c("aut", "cre"),		
    	comment = c(ORCID = "0000-0001-8269-535X")),
    person("Alexander", "Lipka", email = "alipka@illinois.edu" , role = "aut",
    	comment = c(ORCID = "0000-0003-1571-8528"))
    )
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
biocViews:
Depends: R (>= 3.5.0)
Imports: data.table, mvtnorm, stats, utils, SNPRelate, gdsfmt
Suggests: knitr, rmarkdown
RoxygenNote: 7.1.1
VignetteBuilder: knitr
URL: https://github.com/samuelbfernandes/simplePHENOTYPES
BugReports: https://github.com/samuelbfernandes/simplePHENOTYPES/issues
NeedsCompilation: no
Repository: https://samuelbfernandes.r-universe.dev
Date/Publication: 2025-09-18 21:12:41 UTC
RemoteUrl: https://github.com/samuelbfernandes/simplephenotypes
RemoteRef: HEAD
RemoteSha: 040cac186c122579d5d0128e075b39286a8db4a7
Packaged: 2026-06-18 08:57:48 UTC; root
Author: Samuel Fernandes [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-8269-535X>),
  Alexander Lipka [aut] (ORCID: <https://orcid.org/0000-0003-1571-8528>)
Maintainer: Samuel Fernandes <samuelf@illinois.edu>