Package: simplePHENOTYPES 1.3.0

Samuel Fernandes

simplePHENOTYPES: Simulation of Pleiotropic, Linked and Epistatic Phenotypes

The number of studies involving correlated traits and the availability of tools to handle this type of data has increased considerably in the last decade. With such a demand, we need tools for testing hypotheses related to single and multi-trait (correlated) phenotypes based on many genetic settings. Thus, we implemented various options for simulation of pleiotropy and Linkage Disequilibrium under additive, dominance and epistatic models. The simulation currently takes a marker data set as an input and then uses it for simulating multiple traits as described in Fernandes and Lipka (2020) <doi:10.1186/s12859-020-03804-y>.

Authors:Samuel Fernandes [aut, cre], Alexander Lipka [aut]

simplePHENOTYPES_1.3.0.tar.gz
simplePHENOTYPES_1.3.0.zip(r-4.7)simplePHENOTYPES_1.3.0.zip(r-4.6)simplePHENOTYPES_1.3.0.zip(r-4.5)
simplePHENOTYPES_1.3.0.tgz(r-4.6-any)simplePHENOTYPES_1.3.0.tgz(r-4.5-any)
simplePHENOTYPES_1.3.0.tar.gz(r-4.7-any)simplePHENOTYPES_1.3.0.tar.gz(r-4.6-any)
simplePHENOTYPES_1.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
simplePHENOTYPES/json (API)

# Install 'simplePHENOTYPES' in R:

install.packages('simplePHENOTYPES', repos = c('https://samuelbfernandes.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/samuelbfernandes/simplephenotypes/issues

On CRAN:

pleiotropy simulation

5.62 score 16 stars 26 scripts 272 downloads 1 mentions 1 exports 5 dependencies

Last updated from:040cac186c. Checks:7 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	NOTE	97
source / vignettes	OK	191
linux-release-x86_64	NOTE	127
macos-release-arm64	NOTE	139
macos-oldrel-arm64	NOTE	152
windows-devel	NOTE	146
windows-release	NOTE	99
windows-oldrel	NOTE	100
wasm-release	OK	102