Package: simplePHENOTYPES 1.3.0

Samuel Fernandes

simplePHENOTYPES: Simulation of Pleiotropic, Linked and Epistatic Phenotypes

The number of studies involving correlated traits and the availability of tools to handle this type of data has increased considerably in the last decade. With such a demand, we need tools for testing hypotheses related to single and multi-trait (correlated) phenotypes based on many genetic settings. Thus, we implemented various options for simulation of pleiotropy and Linkage Disequilibrium under additive, dominance and epistatic models. The simulation currently takes a marker data set as an input and then uses it for simulating multiple traits as described in Fernandes and Lipka (2020) <doi:10.1186/s12859-020-03804-y>.

Authors:Samuel Fernandes [aut, cre], Alexander Lipka [aut]

simplePHENOTYPES_1.3.0.tar.gz
simplePHENOTYPES_1.3.0.zip(r-4.5)simplePHENOTYPES_1.3.0.zip(r-4.4)simplePHENOTYPES_1.3.0.zip(r-4.3)
simplePHENOTYPES_1.3.0.tgz(r-4.4-any)simplePHENOTYPES_1.3.0.tgz(r-4.3-any)
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simplePHENOTYPES.pdf |simplePHENOTYPES.html✨
simplePHENOTYPES/json (API)
NEWS

# Install 'simplePHENOTYPES' in R:

install.packages('simplePHENOTYPES', repos = c('https://samuelbfernandes.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/samuelbfernandes/simplephenotypes/issues

Datasets:

On CRAN:

pleiotropy simulation

4.95 score 12 stars 15 scripts 236 downloads 1 mentions 1 exports 4 dependencies

Last updated 3 years agofrom:c7416412f0. Checks:OK: 3 NOTE: 4. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 05 2024
R-4.5-win	NOTE	Nov 05 2024
R-4.5-linux	NOTE	Nov 05 2024
R-4.4-win	NOTE	Nov 05 2024
R-4.4-mac	NOTE	Nov 05 2024
R-4.3-win	OK	Nov 05 2024
R-4.3-mac	OK	Nov 05 2024